The report was generated using the JSEQ_scRNAseq single-cell analysis pipeline. For more information, please visit: https://github.com/jkubis96/JSEQ_scRNAseq


1 Analysis Configuration Parameters

Parameter Value
mt_per 25
scale_factor 1e+06
n_features 1500
c_res 0.5
heterogeneity var
mt_cssg FALSE
m_val 0.05
top_m 50
max_genes 1000
max_combine 1000
loss_val 0.05
s_factor 0.7
p_bin 0.1
drop TRUE
min_c 10

The parameters above were used during the current analysis.
If you need to apply different analysis conditions, modify the parameters in the configuration file.

Parameters description:

  • mt_per
    Maximum percentage of mitochondrial genes per cell.
    Default: 25%
  • down
    Lower threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • up
    Upper threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • scale_factor
    Scale factor used for data normalization.
  • n_features
    Number of variable features to detect for clustering.
  • c_res
    Clustering resolution — higher values produce more clusters.
  • heterogeneity
    Method for estimating cluster heterogeneity.
    Options: var (within-cluster variance), deg (deregulated gene profiles).
    Default: deg
  • mt_cssg
    Whether to include mitochondrial genes when creating subclasses and subtypes.
    Options: TRUE, FALSE.
    Default: FALSE
  • m_val
    Maximum p-value threshold for marker detection in advanced subtype analyses.
    Default: 0.05
  • top_m
    Maximum number of top markers used for naming clusters based on effect size metrics.
    Default: 50
  • max_genes
    Maximum number of input genes considered in cluster heterogeneity discovery.
    Default: 1000
  • max_combine
    Maximum number of initial combinations for each iteration during heterogeneity discovery.
    Default: 1000
  • loss_val
    Assigned value for potentially unclassified cells within a cluster.
  • s_factor
    Maximum split factor for gene occurrence in heterogeneity discovery (0.2–1).
    Default: 0.8
  • p_bin
    Minimum cell proportion required for population presence based on binomial test p-value.
    Default: 0.05
  • min_c
    Minimum cell proportion required for population presence as defined by the user (independent of binomial test).
    Default: 10
  • drop
    Boolean indicating whether to drop non-significant subtypes based on p_bin and min_c.
    Default: TRUE

The configuration file is available in the directory:
JSEQ_scRNAseq/requirements_file/config_file.conf

Additional configuration files for other analysis steps can also be found in:
JSEQ_scRNAseq/requirements_file

For more information, please visit:
https://github.com/jkubis96/JSEQ_scRNAseq



2 Cell content analysis

2.1 Read distribution across genomic features

2.2 Count (UMI) per barcode (cell)

2.3 Cell barcode knee plot

The above graph illustrates general trends and quality metrics at the initial stage of single-cell analysis; however, it does not represent the final number of detected cells.

2.4 Ratio of number of genes to counts

2.5 Number of genes and counts per cell

2.6 Percentage of ribosomal and mitochondrial genes [%]



3 Quality control of cell content

3.1 Genes per cell content & thresholds

3.2 Genes upper & lower thresholds per cell

3.3 Number of cells across different stages of analysis



4 Gene expression analysis across cells

4.1 Top highly variable genes in the dataset



5 Princilpe component selection

5.1 ElbowPlot - principal components cutoff

5.2 JackStrawPlot - PC significance



6 Cells clustering

6.1 UMAP clusters



7 Subclasses identification based on marker genes

7.1 PCA cisualization of subclasses

7.2 UMAP visualization of subclasses

7.3 Subclasses - cell composition


7.4 Subclasses markers - top 25


Top 25 merkers
genes pct_occurrence esm avg_logFC p_val cluster p_adj_bf p_adj_bh subclass
ENSG00000249392 0.0178571 0.2556528 4.9052233 0.0051234 1 0.2561678 0.1071844 STR FOXP1 ENSG00000249392
ENSG00000234352.var1 0.0178571 0.2154889 3.0648257 0.0338988 1 1.0000000 0.1071844 STR FOXP1 ENSG00000249392
LINGO1 0.5297619 0.2090486 0.2966038 0.0014012 1 0.0700585 0.0700585 STR FOXP1 ENSG00000249392
ACTL8 0.0119048 0.2081250 4.3306021 0.0224446 1 1.0000000 0.1071844 STR FOXP1 ENSG00000249392
MGP 0.0119048 0.2080963 4.3142259 0.0224446 1 1.0000000 0.1071844 STR FOXP1 ENSG00000249392
ENSG00000232006 0.0119048 0.2079948 4.2831813 0.0224446 1 1.0000000 0.1071844 STR FOXP1 ENSG00000249392
LINC02712 0.0119048 0.2079172 4.2771540 0.0224446 1 1.0000000 0.1071844 STR FOXP1 ENSG00000249392
ADCY4 0.0119048 0.2077753 4.2365914 0.0224446 1 1.0000000 0.1071844 STR FOXP1 ENSG00000249392
ENSG00000285471 0.0119048 0.2077700 4.1092209 0.0224446 1 1.0000000 0.1071844 STR FOXP1 ENSG00000249392
GPNMB 0.6162791 2.0944968 3.7698919 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
CALR 0.7906977 1.9066324 2.5693849 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
HSP90B1 0.9418605 1.8943620 2.1051553 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
ANP32B 0.7325581 1.8781077 2.7303839 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
GULP1 0.5581395 1.8685657 3.5706332 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
LAMA4 0.4651163 1.8281115 4.1661415 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
FGF12.var1 0.6279070 1.8067424 3.1858582 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
LIMCH1 0.7441860 1.8058109 2.6213583 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
SLFN5 0.4767442 1.8011154 3.9879790 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
ZEB2 0.5930233 1.7607875 3.2203482 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
MAP4K4 0.7558140 1.7336150 2.4393189 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
HSPA5 0.7906977 1.6926915 2.2963814 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
PDIA3 0.7674419 1.6876956 2.3659564 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
LMO4 0.5930233 1.6661821 2.9474825 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
TFAP2B 0.5348837 1.6645896 3.3161703 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
CANX 0.8372093 1.6523976 2.1566665 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
ATP1A2 0.3255814 1.6512997 5.3757415 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
ANXA2 0.4883721 1.6457430 3.5405495 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
ARPC5 0.7558140 1.6291395 2.3543710 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
PCDH7 0.6046512 1.6204307 2.8892638 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
SLC8A2 0.3488372 1.6202482 4.7902253 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
CNTN6 0.4883721 1.6145653 3.3769172 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
AFAP1L2 0.3604651 1.6144094 4.6071405 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
LIX1 0.3255814 1.6138025 5.2901422 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
H1-0 0.4651163 1.6073293 3.4504379 0.0000000 3 0.0000000 0.0000000 STR FOXP1 HSP90B1
MAP1B 0.8503937 1.8608036 2.3378846 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
DNAJA1 0.7716535 1.5970220 2.2639830 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
FNBP1L 0.6692913 1.5427363 2.5241227 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
STMN2 0.6141732 1.4750699 2.6305559 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
SOX4 0.6220472 1.4406446 2.5131370 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
GAP43 0.5511811 1.4047371 2.8321972 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
H3-3B 0.7165354 1.4036212 2.1178948 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
SARS1 0.6535433 1.3756443 2.2222622 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
SOX11 0.5275591 1.3631996 2.7701609 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
KIF5C 0.5275591 1.3598695 2.8282823 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
SRRM1 0.6850394 1.3555102 2.1313061 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
RPL5 0.9212598 1.3395330 1.4893058 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
AKAP9 0.6062992 1.3376885 2.3693630 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
SMC3 0.5984252 1.3325402 2.3900536 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
NR2F1 0.4960630 1.3127567 2.8124838 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
RPL6 0.8425197 1.3074928 1.6278502 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
MATR3 0.7559055 1.2890668 1.8133802 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
HSP90AB1 0.8503937 1.2840829 1.5887697 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
DCX 0.3937008 1.2796600 3.4475683 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
MAP2 0.5984252 1.2791690 2.3129654 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
RPL21 0.8582677 1.2764159 1.5734096 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
ELAVL4 0.3543307 1.2740981 3.8860245 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
COPG2 0.5039370 1.2655883 2.7032363 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
SON 0.6141732 1.2538559 2.1564871 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
RPL4 0.8188976 1.2399229 1.5887421 0.0000000 2 0.0000000 0.0000000 STR FOXP1 MALAT1
SUZ12 0.9422222 0.8041839 0.4637022 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
RFX2 0.6577778 0.7637059 1.0520276 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
ANKFN1.var1 0.4044444 0.7498445 1.8098946 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
LINGO1 0.6711111 0.6947834 0.9320398 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
HS6ST3 0.2666667 0.6939077 2.4488439 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
CHST11 0.5733333 0.6611290 1.0451854 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
KLHL15 0.4044444 0.6528568 1.4850776 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
PROCR 0.1733333 0.6399800 3.6684571 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
LINC02814 0.1955556 0.6155723 2.8997705 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
LINC02259 0.3200000 0.5968785 1.6609901 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
DOCK9 0.4400000 0.5926148 1.2095871 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
CFAP251 0.2311111 0.5870735 2.2009665 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
PPAT 0.2977778 0.5865903 1.7538344 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
ZFPM2 0.5555556 0.5811126 0.9162939 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
LINC00486 0.4444444 0.5726458 1.1299406 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
ENSG00000217702 0.2311111 0.5677062 2.0855956 0.0000000 0 0.0000001 0.0000000 STR FOXP1 SUZ12
ENSG00000227193 0.2666667 0.5661347 1.8568308 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
CYTIP 0.1288889 0.5624723 4.2118432 0.0000000 0 0.0000000 0.0000000 STR FOXP1 SUZ12
ENSG00000251314.var1 0.2311111 0.5593330 2.0476020 0.0000000 0 0.0000001 0.0000000 STR FOXP1 SUZ12
ENSG00000254840 0.3600000 0.5488585 1.3237147 0.0000000 0 0.0000004 0.0000000 STR FOXP1 SUZ12
LINC02884 0.2133333 0.5463133 2.1573282 0.0000000 0 0.0000002 0.0000000 STR FOXP1 SUZ12
LINC02774 0.2266667 0.5445436 2.0238910 0.0000000 0 0.0000002 0.0000000 STR FOXP1 SUZ12
CYRIB 0.2266667 0.5425644 1.9547587 0.0000000 0 0.0000014 0.0000001 STR FOXP1 SUZ12
SLBP 0.5644444 0.5421701 0.8263653 0.0000000 0 0.0000002 0.0000000 STR FOXP1 SUZ12
CYP2F1 0.1866667 0.5325160 2.3238782 0.0000000 0 0.0000007 0.0000000 STR FOXP1 SUZ12


7.5 Heatmap of cell subclasses - log(CPM + 1)

7.6 Heatmap of cell subclasses - scale(log(CPM + 1))




8 Subtypes identification based on CSSG genes

8.1 UMAP visualization


8.2 Subtypes - cell composition


8.3 Subtypes markers - top 25


Top 25 markers
genes pct_occurrence esm avg_logFC p_val subtype p_adj_bf p_adj_bh cluster
RIMKLA 0.1818182 3.1229200 7.9835298 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
ENSG00000159239 0.1818182 3.1224083 7.7770236 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
GPC3.var1 0.1818182 3.1209616 7.8697051 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
SRD5A1 0.3636364 3.0491189 5.1583740 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
LINC00922 0.2727273 2.6849069 5.4024492 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
ENSG00000223697 0.1818182 2.5658051 6.1284373 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
PTENP1-AS 0.1818182 2.5266565 6.0891323 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
SLC8A1-AS1 0.1818182 2.5094949 6.0548425 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
TAF9B 0.1818182 2.3886713 5.9320813 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
SLC9A2 0.1818182 2.3570804 5.8930827 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
PTENP1 0.1818182 2.3368509 5.8605588 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
MB21D2 0.1818182 2.2318705 5.3779694 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000002 0.0000000 2
ENSG00000246451 0.1818182 2.1454836 5.2915209 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000002 0.0000000 2
DLGAP3 0.1818182 2.1225747 5.2677314 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000002 0.0000000 2
CHD5 0.1818182 2.0488007 5.5817881 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000000 0.0000000 2
EYA2 0.2727273 1.9641976 4.1270593 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000194 0.0000007 2
UNK 0.3636364 1.9637643 3.6187829 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000387 0.0000012 2
ENSG00000273284 0.1818182 1.9530613 5.0787069 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000002 0.0000000 2
LINC01967 0.1818182 1.9519173 4.8507030 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000171 0.0000007 2
BABAM1 0.1818182 1.9366546 4.8172978 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000171 0.0000007 2
EDA 0.4545455 1.8945330 3.3241682 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000065 0.0000004 2
C3orf35 0.1818182 1.8854122 4.7721197 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000198 0.0000007 2
CDH7 0.3636364 1.8827074 3.5910575 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000229 0.0000008 2
MIOS-DT 0.1818182 1.8813192 4.7815429 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000198 0.0000007 2
CNN3-DT 0.1818182 1.8664549 4.7529749 0.0000000 MEL DCT MALAT1 - LINGO1 0.0000198 0.0000007 2
IGF2R 1.0000000 1.0115732 0.6665795 0.0000000 STR FOXP1 ENSG00000249392 - IGF2R 0.0000000 0.0000000 1
LINGO1 0.7471264 0.6114784 0.6784880 0.0000000 STR FOXP1 ENSG00000249392 - IGF2R 0.0000002 0.0000001 1
ENSG00000249392 0.0229885 0.3614244 5.1127641 0.0024936 STR FOXP1 ENSG00000249392 - IGF2R 0.1246784 0.0249357 1
MGP 0.0229885 0.3613752 5.0939043 0.0024936 STR FOXP1 ENSG00000249392 - IGF2R 0.1246784 0.0249357 1
FDCSP 0.0229885 0.3116514 3.4453972 0.0272818 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000214347 0.0229885 0.3068966 3.3896796 0.0272818 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
LINC02296 0.0229885 0.2950371 3.2077382 0.0272818 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ANKHD1-EIF4EBP3 0.0114943 0.2540766 4.1517892 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
APOL6 0.0114943 0.2540766 4.1192224 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ARRDC4 0.0114943 0.2540766 4.1538094 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
BTN3A3 0.0114943 0.2540766 4.1755825 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
CHEK2P5 0.0114943 0.2540766 4.1478248 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
CHN2-AS1 0.0114943 0.2540766 4.1732634 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
DDX55P1 0.0114943 0.2540766 4.0560532 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
DENND10P1 0.0114943 0.2540766 4.0538283 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
EEF1A1P30 0.0114943 0.2540766 3.9779940 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
EIF4HP1 0.0114943 0.2540766 4.1127998 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000223779 0.0114943 0.2540766 4.1192224 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000232006 0.0114943 0.2540766 4.0560532 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000233491 0.0114943 0.2540766 3.9779940 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000237773.var2 0.0114943 0.2540766 4.1732634 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000243349 0.0114943 0.2540766 4.1600298 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000249782 0.0114943 0.2540766 4.0369996 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000250453.var1 0.0114943 0.2540766 4.0571766 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000254350 0.0114943 0.2540766 4.1497946 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000259370 0.0114943 0.2540766 4.1643178 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000259688 0.0114943 0.2540766 4.1827552 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000262482 0.0114943 0.2540766 4.1643178 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000266978 0.0114943 0.2540766 4.0560532 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000268083 0.0114943 0.2540766 4.1687265 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000269688 0.0114943 0.2540766 4.1687265 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000271536 0.0114943 0.2540766 4.1643178 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000272631 0.0114943 0.2540766 4.1538094 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000274863 0.0114943 0.2540766 4.1127998 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000278929 0.0114943 0.2540766 4.0571766 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000285142 0.0114943 0.2540766 4.1497946 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000285563 0.0114943 0.2540766 4.1517892 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000285909 0.0114943 0.2540766 4.1643178 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000285986 0.0114943 0.2540766 4.1478248 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000286591 0.0114943 0.2540766 4.1600298 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ENSG00000286746.var1 0.0114943 0.2540766 4.0369996 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
ETV7 0.0114943 0.2540766 4.1364924 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
FAM87A 0.0114943 0.2540766 4.0853214 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
FBXL22 0.0114943 0.2540766 4.1538094 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
FLVCR2 0.0114943 0.2540766 4.0369996 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
H2BC12 0.0114943 0.2540766 4.0676369 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
HLA-H 0.0114943 0.2540766 4.1006666 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
HNRNPA3P12 0.0114943 0.2540766 4.0676369 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
HSPE1P6 0.0114943 0.2540766 4.1364924 0.0328851 STR FOXP1 ENSG00000249392 - IGF2R 1.0000000 0.0328851 1
LINC01951 0.5000000 2.1487344 3.6884614 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
LAMB1 0.4545455 1.9750966 3.6217509 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
SPAG17 0.4545455 1.8650503 3.3591232 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
ZNF773 0.1363636 1.8612824 7.2099644 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
MAGEA11 0.2727273 1.7987083 4.2442507 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
ALOX15 0.3636364 1.7260142 3.5905916 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
LMO4 0.7272727 1.6932561 2.3794001 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
ATP1B2 0.2727273 1.6651351 3.9977762 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
FGF12.var1 0.6363636 1.6479415 2.5414728 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
PCDH7 0.7272727 1.6288221 2.3560867 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
LINC00882.var1 0.1363636 1.6248125 5.7049256 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
ANP32B 0.8181818 1.6077343 2.0743587 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
CYTL1 0.2727273 1.5849482 3.8228529 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
GPNMB 0.6363636 1.5841592 2.5025670 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
ZCCHC24 0.1363636 1.5841037 5.5545793 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
HMGB1 1.0000000 1.5492532 1.7003158 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
LGI4 0.2727273 1.5435671 3.7782740 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000001 0.0000000 3
FAM111A 0.1818182 1.5430153 4.6339489 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
SH3D19 0.3181818 1.5302905 3.4720128 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000001 0.0000000 3
RAB13 0.5454545 1.5299756 2.6079789 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000000 0.0000000 3
TCEAL8 0.4090909 1.5161641 2.9733918 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000002 0.0000000 3
CCDC81 0.1818182 1.5010193 4.4096907 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000011 0.0000000 3
ARHGAP15 0.1818182 1.4995498 4.3987300 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000010 0.0000000 3
GULP1 0.5909091 1.4947344 2.4372580 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000001 0.0000000 3
ECI2 0.2272727 1.4945608 4.0364598 0.0000000 STR FOXP1 HSP90B1 - HMGB1 0.0000001 0.0000000 3
ANXA2 0.6666667 1.9843034 2.9894742 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
APCDD1 0.5000000 1.9782247 3.5732871 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
UEVLD 0.3333333 1.9715359 4.3521732 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
SLC16A1 0.5000000 1.8730130 3.3726734 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
LIX1 0.4166667 1.8339026 3.5868287 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
FBXL7 0.5416667 1.8305236 3.0604706 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
ENSG00000278041 0.1666667 1.7863856 5.9047305 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
NEU1 0.2916667 1.7815136 4.2094144 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
IL18R1 0.2916667 1.7642411 4.2970265 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
GULP1 0.6666667 1.7553160 2.6660584 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
TLCD2 0.2916667 1.7206206 4.1334819 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
ATP1A1-AS1 0.1666667 1.7020663 5.6990563 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
CH25H 0.1250000 1.6953586 7.0575798 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
CECR7 0.1250000 1.6940012 7.0576511 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
PXDC1 0.1250000 1.6926706 7.0648336 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
JOSD2 0.1250000 1.6847449 7.1634945 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
SYTL2 0.2916667 1.6774525 4.0084003 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
KIAA1549 0.5833333 1.6550119 2.7277362 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
UBE2E1 0.2916667 1.6112576 4.0078090 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
EFEMP1 0.2916667 1.5666188 3.7974987 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
ALCAM 0.6250000 1.5590239 2.5193537 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
QPRT 0.4583333 1.5527676 2.9639859 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
HMGN2P46 0.2500000 1.5490804 3.9182477 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000001 0.0000000 3
SLFN5 0.5416667 1.5288538 2.7042489 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
ALOX15 0.3333333 1.5223388 3.4179773 0.0000000 STR FOXP1 HSP90B1 - IGF2R 0.0000000 0.0000000 3
OSTC 0.6666667 2.2248667 3.2879855 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
ATP1A2 0.4583333 1.9538979 3.6053910 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
LAMA4 0.5833333 1.8878329 3.0432872 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
REST 0.5833333 1.8839020 3.0214969 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
DPPA4 0.6666667 1.8539571 2.8567976 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
URB1 0.2083333 1.8416094 5.3180490 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
SLC8A2 0.4583333 1.7774757 3.3780053 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
GPNMB 0.6666667 1.7330859 2.6384869 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
FZD10 0.1666667 1.7290941 5.7796283 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
PIGBOS1 0.1666667 1.7056260 5.6844751 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
UCHL3 0.1250000 1.6950895 7.0799693 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
LINC02554 0.1250000 1.6825636 7.1351804 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
COL5A2 0.4583333 1.6719799 3.1617486 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
CALR 0.8750000 1.6428978 2.0296823 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
BZW2 0.5833333 1.6398318 2.6701210 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
UROD 0.2500000 1.6289868 4.4675717 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
THY1 0.2500000 1.6265112 4.1098624 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
ARHGAP18 0.3750000 1.6146443 3.3605496 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
RBPMS 0.1666667 1.6027207 5.1047520 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
RFTN1 0.1666667 1.5998012 5.1320502 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
SERPINB6 0.3333333 1.5784844 3.5358893 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
CCND1 0.4583333 1.5687910 2.8955566 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
RSL1D1 0.8333333 1.5645059 2.0950369 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
CNTN6 0.5833333 1.5614013 2.6176485 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
MDK 0.4166667 1.5554752 3.1582323 0.0000000 STR FOXP1 HSP90B1 - MATR3 0.0000000 0.0000000 3
FKBP1C 0.2000000 3.4747390 7.9152001 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
LINC00649 0.3000000 2.7981247 5.1836898 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
ENSG00000243302 0.2000000 2.7746140 6.1791288 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
ADAMTS16 0.2000000 2.5161055 5.5777609 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
CYP39A1 0.2000000 2.4744878 5.8991652 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
SLC19A2 0.2000000 2.4669852 5.4926392 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
DNAJB6P1 0.4000000 2.2756169 4.0656425 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
LY6G5C 0.2000000 2.1966750 5.2873837 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
PNMA8C 0.2000000 2.1956414 5.2606424 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
LINC02340 0.2000000 2.1356258 4.9710421 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000037 0.0000002 2
ENSG00000233755 0.2000000 2.1212149 5.5784494 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000000 0.0000000 2
FAM104A 0.2000000 2.0994394 4.9131068 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000031 0.0000002 2
LINC02798 0.2000000 2.0831091 4.9202500 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000037 0.0000002 2
LRRN3 0.4000000 2.0695945 3.7548111 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000014 0.0000001 2
IFT20 0.4000000 2.0284473 3.6514848 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000077 0.0000003 2
PLA2G12A 0.2000000 2.0141472 4.8429318 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000037 0.0000002 2
PRKAA2 0.3000000 2.0113848 3.9873446 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000741 0.0000025 2
KRBA2 0.3000000 2.0065285 4.1268558 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000043 0.0000002 2
LETR1 0.2000000 1.9899945 4.8153355 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000043 0.0000002 2
TFE3 0.2000000 1.9666687 4.7845014 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000043 0.0000002 2
NOL9 0.4000000 1.9649004 3.5880787 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000097 0.0000004 2
SLC25A44 0.2000000 1.9371243 4.7850896 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000037 0.0000002 2
RIOK1 0.5000000 1.9305958 3.1633818 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000336 0.0000012 2
OGT 0.4000000 1.8891764 3.5378156 0.0000000 STR FOXP1 MALAT1 - CHST11 0.0000128 0.0000005 2
ZC3H12B 0.2000000 1.8834924 4.5381039 0.0000001 STR FOXP1 MALAT1 - CHST11 0.0001017 0.0000031 2
TMPRSS6 0.1578947 2.1798933 7.4931673 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
SMCR8 0.2105263 1.9650298 5.3128056 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
TLCD5 0.2631579 1.9564801 4.5893826 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
LINC01102 0.1578947 1.8290386 5.7417216 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
TBPL1 0.2631579 1.8278165 4.3330968 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
METTL3 0.1578947 1.8058818 5.6780162 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
MAP6 0.4210526 1.7983280 3.4302671 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
DYNC1LI2 0.7894737 1.7450138 2.3845289 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
SPAG16-DT 0.1052632 1.7293668 6.8096376 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
PIANP 0.1052632 1.7292644 6.9933807 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
SLC66A3 0.1052632 1.7292195 6.9030699 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ENSG00000244327 0.1052632 1.7291930 6.9978810 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ENSG00000227388 0.1052632 1.7290806 6.7864893 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
CHRNB2 0.1052632 1.7273426 6.7443193 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ENSG00000278834 0.1052632 1.7273426 6.7443193 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
PTOV1-AS1 0.1052632 1.7273426 6.7443193 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
TMEM161A 0.1052632 1.7273426 6.7443193 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
MRPL46 0.1052632 1.7273372 6.9527901 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ANKRD13B 0.1052632 1.7272630 6.7456586 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
CHMP5P1 0.1052632 1.7242960 6.7850221 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ENSG00000282978 0.1052632 1.7242792 6.7852082 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ENSG00000277758 0.1052632 1.7242705 6.9164423 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ENSG00000261670 0.1052632 1.7231297 6.8817394 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ENSG00000289183 0.1052632 1.7227291 6.9948950 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
ACTR5 0.1052632 1.7154209 6.9458724 0.0000000 STR FOXP1 MALAT1 - RFX2 0.0000000 0.0000000 2
RPL32 1.0000000 1.6157728 1.7547757 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
ACTG1 0.7857143 1.3388501 1.8062170 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
ENSG00000227081 0.8035714 1.3061411 1.6902371 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
DNAJA1 0.8392857 1.2948068 1.6475707 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
MAP1B 0.8571429 1.2892613 1.5651332 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL4 0.9464286 1.2742953 1.3889241 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL26 0.8035714 1.2703479 1.6550922 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL6 0.9464286 1.2500901 1.3414274 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPSA 0.7321429 1.2271056 1.7518700 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
GABPB1-AS1 0.5892857 1.2190221 2.0509335 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
CCDC181 0.3750000 1.2138877 2.8216955 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL3 0.8750000 1.2011284 1.4215422 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPS27 0.9285714 1.1971056 1.3071991 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
SMC5 0.3750000 1.1959597 2.7925076 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL3P4 0.6964286 1.1931548 1.7902784 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL9 0.8750000 1.1917765 1.4526486 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPS3AP47 0.6964286 1.1701402 1.7390026 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
SMC3 0.6607143 1.1694651 1.7954899 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL7A 0.7142857 1.1623201 1.7211610 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL35A 0.8750000 1.1560528 1.3378008 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPL21 0.9107143 1.1550315 1.2762620 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
AKAP9 0.6785714 1.1538923 1.7836380 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
HSP90AB1 0.9107143 1.1535389 1.2952700 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
RPS19 0.8571429 1.1507322 1.3635083 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
FNBP1L 0.6964286 1.1420339 1.6691710 0.0000000 STR FOXP1 MALAT1 - RPL32 0.0000000 0.0000000 2
ENSG00000217702 0.5777778 1.6396338 2.6899199 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
GP5 0.2222222 1.5940988 5.6859111 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
ENSG00000223393 1.0000000 1.5529720 1.4268704 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
HS6ST3 0.5111111 1.5027498 2.6329777 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
LINC00992 0.2666667 1.3536970 3.9606569 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
APOH 0.6000000 1.3500326 2.0923921 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
LINC02814 0.3777778 1.2464697 2.6868232 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
FDX1 0.2666667 1.2210455 3.3430884 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
LINC02549 0.1111111 1.1463839 7.0040975 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
ENSG00000287020 0.2000000 1.0448351 3.4039888 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000003 0.0000000 0
CLYBL 0.3777778 1.0150322 2.2157000 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000007 0.0000001 0
PTDSS1 0.1555556 0.9984541 3.8206130 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000009 0.0000001 0
LINC00378 0.2888889 0.9943262 2.5131172 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000031 0.0000002 0
TRIM71 0.3777778 0.9596150 2.0199074 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000143 0.0000008 0
FARP1.var1 0.3111111 0.9583366 2.3003965 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000160 0.0000008 0
LINC02259 0.4888889 0.9397279 1.6475557 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000077 0.0000004 0
N4BP2L1 0.2000000 0.9380357 3.0605697 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000048 0.0000003 0
AK5 0.2888889 0.9361376 2.2904762 0.0000004 STR FOXP1 SUZ12 - ENSG00000223393 0.0001410 0.0000059 0
SYT9 0.1333333 0.9333939 3.9047365 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000074 0.0000004 0
CYRIB 0.3777778 0.9289080 1.9877204 0.0000001 STR FOXP1 SUZ12 - ENSG00000223393 0.0000177 0.0000008 0
ENSG00000270871 0.2000000 0.9074921 2.8465941 0.0000003 STR FOXP1 SUZ12 - ENSG00000223393 0.0000932 0.0000041 0
SUZ12 0.9777778 0.8948136 0.4769326 0.0000000 STR FOXP1 SUZ12 - ENSG00000223393 0.0000000 0.0000000 0
ETFA 0.2444444 0.8521336 2.3545337 0.0000010 STR FOXP1 SUZ12 - ENSG00000223393 0.0003515 0.0000126 0
UBE2E2.var1 0.5111111 0.8224291 1.3653061 0.0000006 STR FOXP1 SUZ12 - ENSG00000223393 0.0001994 0.0000080 0
LINC02746 0.1777778 0.8153427 2.7827427 0.0000011 STR FOXP1 SUZ12 - ENSG00000223393 0.0003804 0.0000129 0
LINGO1 1.0000000 1.6729577 1.4976714 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
SLBP 0.7404580 0.9096772 1.1092412 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
BCOR 0.4885496 0.8564744 1.6696716 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
IGF2R 0.9236641 0.8326397 0.5843036 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
ASIP 0.3740458 0.7486586 1.8000391 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
ENSG00000251314.var1 0.3206107 0.7386647 2.0809341 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
CFAP251 0.2900763 0.7228311 2.1866243 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
ENSG00000227193 0.3511450 0.6965187 1.7816603 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
RASGEF1B.var1 0.4503817 0.6821274 1.3730850 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000001 0.0000000 0
ANKFN1.var1 0.4198473 0.6671733 1.4402295 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000002 0.0000000 0
CYTIP 0.1679389 0.6336173 2.9988375 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000003 0.0000000 0
DIP2C 0.3893130 0.6229481 1.3663991 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000023 0.0000002 0
PROCR 0.1984733 0.6066577 2.4019788 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000016 0.0000001 0
CHST11 0.6106870 0.5973387 0.8662946 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000029 0.0000002 0
SP100 0.2595420 0.5972076 1.8402797 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000090 0.0000005 0
SUZ12 0.9389313 0.5884851 0.3406848 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000000 0.0000000 0
RFX2 0.7022901 0.5851705 0.7212899 0.0000000 STR FOXP1 SUZ12 - LINGO1 0.0000040 0.0000003 0
KLHL15 0.4351145 0.5808380 1.1758626 0.0000001 STR FOXP1 SUZ12 - LINGO1 0.0000125 0.0000007 0
PATJ 0.3053435 0.5510483 1.4529275 0.0000003 STR FOXP1 SUZ12 - LINGO1 0.0000824 0.0000034 0
PPAT 0.3511450 0.5492985 1.3530815 0.0000002 STR FOXP1 SUZ12 - LINGO1 0.0000371 0.0000019 0
LGALS1 0.1145038 0.5459868 3.2845177 0.0000002 STR FOXP1 SUZ12 - LINGO1 0.0000484 0.0000022 0
LINC01019 0.2061069 0.5414883 2.0017330 0.0000002 STR FOXP1 SUZ12 - LINGO1 0.0000398 0.0000019 0
NPAS1 0.1984733 0.5395633 2.0379505 0.0000002 STR FOXP1 SUZ12 - LINGO1 0.0000564 0.0000025 0
SLC26A3 0.4427481 0.5186878 0.9635996 0.0000002 STR FOXP1 SUZ12 - LINGO1 0.0000379 0.0000019 0
LINC01609 0.1679389 0.5143810 2.1431840 0.0000013 STR FOXP1 SUZ12 - LINGO1 0.0003276 0.0000113 0
PYCR2 0.2500000 1.8968883 5.1445676 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000000 0.0000000 2
GAP43 0.7142857 1.4646902 2.0962793 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000000 0.0000000 2
SPATA33 0.2142857 1.3062847 3.7811575 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000007 0.0000001 2
SARS1 0.7857143 1.2981787 1.6819780 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000001 0.0000000 2
NEGR1.var1 0.3928571 1.2896409 2.7015649 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000005 0.0000001 2
RNF220.var1 0.2857143 1.2634976 3.1362722 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000026 0.0000003 2
MAP1B 0.8928571 1.2550933 1.4755397 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000011 0.0000002 2
PAPSS1 0.2142857 1.2471953 3.6061513 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000046 0.0000004 2
CENPT 0.1071429 1.2414472 5.2890622 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000080 0.0000004 2
ONECUT3 0.1071429 1.2309938 5.2608862 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000076 0.0000004 2
NARS1 0.6428571 1.2278989 1.8820483 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000027 0.0000003 2
SENP2 0.3214286 1.2230242 2.8462098 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000065 0.0000004 2
CTXN1 0.1071429 1.2189297 5.1960016 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000080 0.0000004 2
DYNLT2 0.1071429 1.2127569 5.1391288 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000080 0.0000004 2
SLC37A1 0.1785714 1.2011906 3.7775502 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000289 0.0000012 2
TRO 0.2500000 1.1997261 3.2298632 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000071 0.0000004 2
ZNF768 0.1071429 1.1994755 5.1460935 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000085 0.0000004 2
PFDN5 0.1071429 1.1869527 5.1106212 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000085 0.0000004 2
PRRC2C 0.8928571 1.1866930 1.3994263 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000056 0.0000004 2
LONRF1 0.2142857 1.1840263 3.3662757 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000731 0.0000020 2
CXADR 0.3571429 1.1833491 2.5952838 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000208 0.0000009 2
HDGFL3 0.3928571 1.1760510 2.3963250 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000561 0.0000018 2
LBR 0.4642857 1.1739310 2.2433178 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000134 0.0000007 2
STMN2 0.7142857 1.1692234 1.6967996 0.0000000 STR TAC1 MALAT1 - ZFPM2 0.0000160 0.0000008 2
ATIC 0.1428571 1.1603698 4.0714882 0.0000001 STR TAC1 MALAT1 - ZFPM2 0.0001731 0.0000039 2
RFX2 1.0000000 1.3962184 1.2622591 0.0000000 Unknow ENSG00000249392 - RFX2 0.0000000 0.0000000 1
LRWD1 0.1428571 0.9419072 3.0631571 0.0003167 Unknow ENSG00000249392 - RFX2 0.0057010 0.0028505 1


8.4 Heatmap of cell subtypes - log(CPM + 1)

8.5 Heatmap of cell subtypes - scale(log(CPM + 1))




9 Disclaimer

The analysis was performed through the non-profit and open-source pipeline JSEQ_scRNAseq. Remember, in silico analysis must be validated in vitro or in vivo. For more information, visit GitHub or contact us. JSEQ_scRNAseq was created at the Institute of Bioorganic Chemistry, Polish Academy of Sciences.